Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs58920623 chr14:24411883 A/G 4.06E-5 508 23.58 21.15 16.63 KM Plot
LGG rs58941536 chr14:24410262 C/G 3.54E-5 504 23.58 21.45 16.63 KM Plot
LGG rs59003857 chr5:168981058 T/C 1.43E-8 509 21.87 24.07 6.83 KM Plot
LGG rs59073622 chr16:10845388 A/G 2.77E-5 499 23.53 22.17 8.17 KM Plot
LGG rs59202154 chr3:194787783 G/A 3.83E-6 501 21.6 26.03 5.17 KM Plot
LGG rs59324945 chr14:24414624 C/T 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs59434518 chr14:24420597 A/T 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs59484581 chr14:24412279 A/G 4.06E-5 508 23.58 21.15 16.63 KM Plot
LGG rs59488551 chr7:20696744 C/A 8.41E-5 497 22.58 23.18 14.47 KM Plot
LGG rs59581894 chr6:53113554 T/C 1.85E-5 509 22.47 23.5 14.8 KM Plot
LGG rs59631714 chr21:30549583 GA/G 0 507 21.18 25.95 3.2 KM Plot
LGG rs59737379 chr6:53115621 A/G 2.8E-5 509 22.58 21.55 14.8 KM Plot
LGG rs60177702 chr14:24420498 T/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs6019113 chr20:47016386 T/C 6.98E-5 507 23.5 20.98 20.43 KM Plot
LGG rs6019114 chr20:47016488 G/T 6.98E-5 507 23.5 20.98 20.43 KM Plot